NCPI FHIR Implementation Guide
0.2.0 - ci-build

NCPI FHIR Implementation Guide - Local Development build (v0.2.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

Table of Contents

.. 0 Table of Contents
... 1 Home
... 2 Authors
... 3 Background
... 4 Childhood Cancer
... 5 Contact
... 6 Downloads
... 7 Ehr
... 8 Example Raw Data
... 9 Example Study Metadata
... 10 Example Research Study Baylor Cmg
... 11 Family
... 12 FHIR Basics
... 13 Fhir Version
... 14 Files
... 15 Finding a Research Study
... 16 Harmonization
... 17 Ig Versioning
... 18 Modular Ig
... 19 Ncpi
... 20 Participant
... 21 Performing a Genomic Analysis
... 22 Rare Disease
... 23 Research Study
... 24 Structure Definition Study Data Dictionary Variable Note
... 25 Study Metadata
... 26 Tabular
... 27 Use Case Tabular Data
... 28 Use Cases
... 29 Using Source Data
... 30 Artifacts Summary
.... 30.1 CDM Research Study
.... 30.2 DRS Document Reference
.... 30.3 NCPI Disease
.... 30.4 NCPI Family Relationship
.... 30.5 NCPI Research Study
.... 30.6 NCPI Phenotype
.... 30.7 Raw Data Observation
.... 30.8 Research Consortium
.... 30.9 Research Document Reference
.... 30.10 Research Study Subject
.... 30.11 Research Task
.... 30.12 NCPI Data Dictionary Harmony
.... 30.13 NCPI Study Data Dictionary Data Table
.... 30.14 NCPI Study Data Dictionary Data Variable
.... 30.15 NCPI Study Group
.... 30.16 Study Summary
.... 30.17 Study Variable Summary
.... 30.18 Research Study Consent
.... 30.19 DRS Attachment
.... 30.20 Research Consent Disease Abbreviation
.... 30.21 Research Usage Limitation Disease Code
.... 30.22 Research Study Design
.... 30.23 Research Study Subject Consent
.... 30.24 Supporting Information
.... 30.25 Condition Inheritance Pattern
.... 30.26 Disease Codes
.... 30.27 Case/Control Vars for 'status' categoricals
.... 30.28 Harmonized ValueSet for data table
.... 30.29 Table ValueSet
.... 30.30 LOINC Answers
.... 30.31 MeSH Terms
.... 30.32 NCPI FHIR Codes
.... 30.33 NIH Consent Code ValueSet
.... 30.34 Phenotype Codes
.... 30.35 Study Design
.... 30.36 tbd-codes
.... 30.37 Condition Inheritance Pattern
.... 30.38 dbGaP Study Design
.... 30.39 Dataset CodeSystem (lists all tables)
.... 30.40 Datatable CodeSystem (lists all variables)
.... 30.41 Human Phenotype Ontology
.... 30.42 Human Genome Variation Society nomenclature
.... 30.43 LOINC Answers
.... 30.44 Mondo Disease Ontology
.... 30.45 NCI Thesaurus
.... 30.46 NCPI FHIR Codes
.... 30.47 Data Types for NCPI Research
.... 30.48 NCPI Study Type
.... 30.49 NIH Consent Codes
.... 30.50 Online Mendelian Inheritance in Man
.... 30.51 ToBeDeterminedCodes ('TbdCodes')
.... 30.52 Summary detail for Center for Mendelian Genomics
.... 30.53 Baylor Hopkins Center for Mendelian Genomics (BH CMG)
.... 30.54 The Center for Mendelian Genomics Consortium (CMG) Consortium
.... 30.55 Baylor Hopkins Center for Mendelian Genomics (BH CMG)
.... 30.56 Participants consented under HMB-IRB-NPU
.... 30.57 Participants consented under HMB-NPU
.... 30.58 BH CMG Study Participants
.... 30.59 Participants consented under HMB-IRB-NPU
.... 30.60 Participants consented under HMB-NPU
.... 30.61 diagnostic-implication-1
.... 30.62 diagnostic-report-1
.... 30.63 disease-example-1
.... 30.64 drs-document-reference-example-1
.... 30.65 ds-bav-consent
.... 30.66 Example Encounter Study 01 Patient 01
.... 30.67 Example of Raw Data
.... 30.68 Example of a Questionnaire to Represent Raw Data
.... 30.69 Example of a QuestionnaireResponse to Represent Raw Data
.... 30.70 Concept Map showing representing harmonization mappings
.... 30.71 Data-Dictionary Table
.... 30.72 Example Study Data Dictionary Variable subjectid
.... 30.73 Example Study Data Dictionary Variable gender
.... 30.74 Example Study Data Dictionary Variable age_at_enrollment
.... 30.75 Example Study Data Dictionary Variable bmi
.... 30.76 Data Dictionary Variable status
.... 30.77 Example Variable Summary with categories (gender)
.... 30.78 Example Group used for Summary Results
.... 30.79 family-relationship-example-1
.... 30.80 family-relationship-example-2
.... 30.81 family-relationship-example-3
.... 30.82 family-relationship-example-4
.... 30.83 gru-consent
.... 30.84 HMB-IRB-NPU Consent
.... 30.85 HMB-NPU Consent
.... 30.86 ncpi-research-consortium-01
.... 30.87 ncpi-research-study-01
.... 30.88 ncpi-research-study-01-conset-group-01-main
.... 30.89 ncpi-research-study-01-group-01-main
.... 30.90 ncpi-research-study-01-patient-01
.... 30.91 ncpi-research-study-01-patient-02
.... 30.92 NCPI Research Study 01 Specimen 01
.... 30.93 ncpi-research-study-subject-01
.... 30.94 organization-example-1
.... 30.95 patient-example-1
.... 30.96 patient-example-2
.... 30.97 patient-example-3
.... 30.98 phenotype-example-1
.... 30.99 practitioner-example-1
.... 30.100 practitioner-role-example-1
.... 30.101 research-document-reference-example-1
.... 30.102 research-study-cmg
.... 30.103 research-study-example-1
.... 30.104 research-study-phs000711
.... 30.105 research-subject-example-1
.... 30.106 research-subject-example-2
.... 30.107 research-subject-example-3
.... 30.108 research-subject-study-01-patient-01
.... 30.109 research-subject-study-01-patient-02
.... 30.110 specimen-example-1
.... 30.111 task-example-1
.... 30.112 task-example-2
.... 30.113 variant-example-1